There is a simple solution. Stop relying on apple's walled garden and install applications the normal user directed way instead of the corporate-loading-walled-garden way.
Yes. Every iOS user should demand they have control of their phone but I don't think that is required is it? If you literally can't install any application except from the app store then things are even worse than I'd heard.
edit: This is apparently true. I can't believe anyone puts up with that. Welcome to the Apple 1984 commercial in real life.